Stains and Dyes

A variety of solutions used to selectively bind to and enhance the visibility of biological structures using color and/or fluorescence; used for histology, protein staining, electrophoresis, bacterial classification, blotting, etc.

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Thermo Scientific Chemicals Methylene Blue, pure, certified, residual water

CAS: 7220-79-3 Molecular Formula: C16H24ClN3O3S Molecular Weight (g/mol): 373.90 MDL Number: MFCD00150008 InChI Key: XQAXGZLFSSPBMK-UHFFFAOYSA-M Synonym: Basic Blue 9 PubChem CID: 6099 ChEBI: CHEBI:6872 IUPAC Name: [7-(dimethylamino)phenothiazin-3-ylidene]-dimethylazanium;chloride SMILES: O.O.O.[Cl-].CN(C)C1=CC2=[S+]C3=CC(=CC=C3N=C2C=C1)N(C)C

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Specifications

PubChem CID	6099
CAS	7220-79-3
Molecular Weight (g/mol)	373.90
ChEBI	CHEBI:6872
MDL Number	MFCD00150008
SMILES	O.O.O.[Cl-].CN(C)C1=CC2=[S+]C3=CC(=CC=C3N=C2C=C1)N(C)C
Synonym	Basic Blue 9
IUPAC Name	[7-(dimethylamino)phenothiazin-3-ylidene]-dimethylazanium;chloride
InChI Key	XQAXGZLFSSPBMK-UHFFFAOYSA-M
Molecular Formula	C16H24ClN3O3S

Thermo Scientific Chemicals Methylene Blue, 1% w/v aq. soln.

CAS: 122965-43-9 | C₁₆H₁₈ClN₃S

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Specifications

Concentration or Composition (by Analyte or Components)	3, 7-Bis(dimethylamino)phenothiazin-5-ium chloride hydrate: 1.0%; Water: 99%
CAS	7732-18-5
MDL Number	MFCD00012111
Physical Form	Liquid
Solubility Information	Miscible with ethanol,chloroform,glacial acetic acid and glycerol. Slightly miscible with pyridine. Immiscible with ethyl ether,xylene,oleic acid,ethanol and acetone.
Chemical Name or Material	Methylene Blue
TSCA	Yes
Recommended Storage	Ambient temperatures
Molecular Formula	C₁₆H₁₈ClN₃S
Formula Weight	319.86
Vapor Pressure	23 hPa (17mm Hg) at 20°C
Assay Percent Range	1% w/v aqueous solution

Thermo Scientific Chemicals Rhodamine B

CAS: 81-88-9 Molecular Formula: C28H31ClN2O3 Molecular Weight (g/mol): 479.02 MDL Number: MFCD00011931 InChI Key: PYWVYCXTNDRMGF-UHFFFAOYSA-N PubChem CID: 6694 ChEBI: CHEBI:52334 IUPAC Name: [9-(2-carboxyphenyl)-6-(diethylamino)xanthen-3-ylidene]-diethylazanium;chloride SMILES: [Cl-].CCN(CC)C1=CC2=[O+]C3=CC(=CC=C3C(C3=CC=CC=C3C(O)=O)=C2C=C1)N(CC)CC

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Specifications

PubChem CID	6694
CAS	81-88-9
Molecular Weight (g/mol)	479.02
ChEBI	CHEBI:52334
MDL Number	MFCD00011931
SMILES	[Cl-].CCN(CC)C1=CC2=[O+]C3=CC(=CC=C3C(C3=CC=CC=C3C(O)=O)=C2C=C1)N(CC)CC
IUPAC Name	[9-(2-carboxyphenyl)-6-(diethylamino)xanthen-3-ylidene]-diethylazanium;chloride
InChI Key	PYWVYCXTNDRMGF-UHFFFAOYSA-N
Molecular Formula	C28H31ClN2O3

Thermo Scientific Chemicals Phenol Red, pure, indicator

CAS: 143-74-8 Molecular Formula: C19H14O5S Molecular Weight (g/mol): 354.38 MDL Number: MFCD00003552 InChI Key: BELBBZDIHDAJOR-UHFFFAOYSA-N Synonym: Phenolsulfonephthalein PubChem CID: 4766 ChEBI: CHEBI:31991 SMILES: OC1=CC=C(C=C1)C1(OS(=O)(=O)C2=CC=CC=C12)C1=CC=C(O)C=C1

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Specifications

PubChem CID	4766
CAS	143-74-8
Molecular Weight (g/mol)	354.38
ChEBI	CHEBI:31991
MDL Number	MFCD00003552
SMILES	OC1=CC=C(C=C1)C1(OS(=O)(=O)C2=CC=CC=C12)C1=CC=C(O)C=C1
Synonym	Phenolsulfonephthalein
InChI Key	BELBBZDIHDAJOR-UHFFFAOYSA-N
Molecular Formula	C19H14O5S

Thermo Scientific Chemicals Sudan III

CAS: 85-86-9 Molecular Formula: C22H16N4O Molecular Weight (g/mol): 352.397 MDL Number: MFCD00003905 InChI Key: HTPQPMPFXUWUOT-UHFFFAOYSA-N Synonym: C.I. 26100; Solvent Red 23 PubChem CID: 6789251 IUPAC Name: 1-[(4-phenyldiazenylphenyl)hydrazinylidene]naphthalen-2-one SMILES: C1=CC=C(C=C1)N=NC2=CC=C(C=C2)NN=C3C(=O)C=CC4=CC=CC=C43

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Specifications

PubChem CID	6789251
CAS	85-86-9
Molecular Weight (g/mol)	352.397
MDL Number	MFCD00003905
SMILES	C1=CC=C(C=C1)N=NC2=CC=C(C=C2)NN=C3C(=O)C=CC4=CC=CC=C43
Synonym	C.I. 26100; Solvent Red 23
IUPAC Name	1-[(4-phenyldiazenylphenyl)hydrazinylidene]naphthalen-2-one
InChI Key	HTPQPMPFXUWUOT-UHFFFAOYSA-N
Molecular Formula	C22H16N4O

Thermo Scientific Chemicals Eriochrome Black T

CAS: 1787-61-7 Molecular Formula: C20H12N3NaO7S Molecular Weight (g/mol): 461.38 MDL Number: MFCD00003935 InChI Key: JHUJLRKQZAPSDP-GXTSIBQPSA-M Synonym: C.I. 14645; Mordant Black 11 PubChem CID: 87355429 SMILES: [Na+].OC1=C2C=CC=CC2=CC=C1N\N=C1/C(=O)C=C(C2=CC(=CC=C12)[N+]([O-])=O)S([O-])(=O)=O

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Specifications

PubChem CID	87355429
CAS	1787-61-7
Molecular Weight (g/mol)	461.38
MDL Number	MFCD00003935
SMILES	[Na+].OC1=C2C=CC=CC2=CC=C1N\N=C1/C(=O)C=C(C2=CC(=CC=C12)[N+]([O-])=O)S([O-])(=O)=O
Synonym	C.I. 14645; Mordant Black 11
InChI Key	JHUJLRKQZAPSDP-GXTSIBQPSA-M
Molecular Formula	C20H12N3NaO7S

Thermo Scientific Chemicals New Coccine, pure

CAS: 2611-82-7 Molecular Formula: C20H11N2Na3O10S3 Molecular Weight (g/mol): 604.46 MDL Number: MFCD00004084 InChI Key: IVNZBWNBYXERPK-DZGBHZPSSA-K Synonym: Acid Red 18,C.I. 16255,Cochineal Red A PubChem CID: 131851859 IUPAC Name: (8Z)-7-oxo-8-[(4-sulfonaphthalen-1-yl)hydrazinylidene]naphthalene-1,3-disulfonic acid;sodium SMILES: [Na+].[Na+].[Na+].[O-]S(=O)(=O)C1=CC2=C(\C(=N\NC3=C4C=CC=CC4=C(C=C3)S([O-])(=O)=O)C(=O)C=C2)C(=C1)S([O-])(=O)=O

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Specifications

PubChem CID	131851859
CAS	2611-82-7
Molecular Weight (g/mol)	604.46
MDL Number	MFCD00004084
SMILES	[Na+].[Na+].[Na+].[O-]S(=O)(=O)C1=CC2=C(\C(=N\NC3=C4C=CC=CC4=C(C=C3)S([O-])(=O)=O)C(=O)C=C2)C(=C1)S([O-])(=O)=O
Synonym	Acid Red 18,C.I. 16255,Cochineal Red A
IUPAC Name	(8Z)-7-oxo-8-[(4-sulfonaphthalen-1-yl)hydrazinylidene]naphthalene-1,3-disulfonic acid;sodium
InChI Key	IVNZBWNBYXERPK-DZGBHZPSSA-K
Molecular Formula	C20H11N2Na3O10S3

Thermo Scientific Chemicals Bromophenol Blue

CAS: 115-39-9 Molecular Formula: C19H10Br4O5S Molecular Weight (g/mol): 669.96 MDL Number: MFCD00005875 InChI Key: UDSAIICHUKSCKT-UHFFFAOYSA-N Synonym: Bromphenol Blue PubChem CID: 8272 ChEBI: CHEBI:59424 IUPAC Name: 2,6-dibromo-4-[3-(3,5-dibromo-4-hydroxyphenyl)-1,1-dioxo-2,1$l^{6}-benzoxathiol-3-yl]phenol SMILES: C1=CC=C2C(=C1)C(OS2(=O)=O)(C3=CC(=C(C(=C3)Br)O)Br)C4=CC(=C(C(=C4)Br)O)Br

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Specifications

PubChem CID	8272
CAS	115-39-9
Molecular Weight (g/mol)	669.96
ChEBI	CHEBI:59424
MDL Number	MFCD00005875
SMILES	C1=CC=C2C(=C1)C(OS2(=O)=O)(C3=CC(=C(C(=C3)Br)O)Br)C4=CC(=C(C(=C4)Br)O)Br
Synonym	Bromphenol Blue
IUPAC Name	2,6-dibromo-4-[3-(3,5-dibromo-4-hydroxyphenyl)-1,1-dioxo-2,1$l^{6}-benzoxathiol-3-yl]phenol
InChI Key	UDSAIICHUKSCKT-UHFFFAOYSA-N
Molecular Formula	C19H10Br4O5S

Thermo Scientific Chemicals Methyl Red, ACS

CAS: 493-52-7 Molecular Formula: C15H15N3O2 Molecular Weight (g/mol): 269.304 MDL Number: MFCD00002425 InChI Key: CEQFOVLGLXCDCX-UHFFFAOYSA-N Synonym: C.I. 13020 PubChem CID: 10303 IUPAC Name: 2-[[4-(dimethylamino)phenyl]diazenyl]benzoic acid SMILES: CN(C)C1=CC=C(C=C1)N=NC2=CC=CC=C2C(=O)O

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Specifications

PubChem CID	10303
CAS	493-52-7
Molecular Weight (g/mol)	269.304
MDL Number	MFCD00002425
SMILES	CN(C)C1=CC=C(C=C1)N=NC2=CC=CC=C2C(=O)O
Synonym	C.I. 13020
IUPAC Name	2-[[4-(dimethylamino)phenyl]diazenyl]benzoic acid
InChI Key	CEQFOVLGLXCDCX-UHFFFAOYSA-N
Molecular Formula	C15H15N3O2

Thermo Scientific Chemicals Bromocresol Green

CAS: 76-60-8 Molecular Formula: C21H14Br4O5S Molecular Weight (g/mol): 698.014 MDL Number: MFCD00005874 InChI Key: FRPHFZCDPYBUAU-UHFFFAOYSA-N Synonym: Bromcresol Green PubChem CID: 6451 IUPAC Name: 2,6-dibromo-4-[3-(3,5-dibromo-4-hydroxy-2-methylphenyl)-1,1-dioxo-2,1$l^{6}-benzoxathiol-3-yl]-3-methylphenol SMILES: CC1=C(C(=C(C=C1C2(C3=CC=CC=C3S(=O)(=O)O2)C4=CC(=C(C(=C4C)Br)O)Br)Br)O)Br

Pricing and Availability
Specifications

PubChem CID	6451
CAS	76-60-8
Molecular Weight (g/mol)	698.014
MDL Number	MFCD00005874
SMILES	CC1=C(C(=C(C=C1C2(C3=CC=CC=C3S(=O)(=O)O2)C4=CC(=C(C(=C4C)Br)O)Br)Br)O)Br
Synonym	Bromcresol Green
IUPAC Name	2,6-dibromo-4-[3-(3,5-dibromo-4-hydroxy-2-methylphenyl)-1,1-dioxo-2,1$l^{6}-benzoxathiol-3-yl]-3-methylphenol
InChI Key	FRPHFZCDPYBUAU-UHFFFAOYSA-N
Molecular Formula	C21H14Br4O5S

Bromocresol Purple sodium salt, 0.04% w/v aq. soln.

CAS: 62625-30-3 Molecular Formula: C21H15Br2NaO5S Molecular Weight (g/mol): 562.204 MDL Number: MFCD00148896 InChI Key: KVSJYIXUWNOWBD-UGAWPWHASA-M Synonym: Bromocresol Purple, water soluble PubChem CID: 23665568 IUPAC Name: sodium;2-[(E)-(3-bromo-4-hydroxy-5-methylphenyl)-(3-bromo-5-methyl-4-oxocyclohexa-2,5-dien-1-ylidene)methyl]benzenesulfonate SMILES: CC1=CC(=C(C2=CC=CC=C2S(=O)(=O)[O-])C3=CC(=C(C(=C3)Br)O)C)C=C(C1=O)Br.[Na+]

Pricing and Availability
Specifications

PubChem CID	23665568
CAS	62625-30-3
Molecular Weight (g/mol)	562.204
MDL Number	MFCD00148896
SMILES	CC1=CC(=C(C2=CC=CC=C2S(=O)(=O)[O-])C3=CC(=C(C(=C3)Br)O)C)C=C(C1=O)Br.[Na+]
Synonym	Bromocresol Purple, water soluble
IUPAC Name	sodium;2-[(E)-(3-bromo-4-hydroxy-5-methylphenyl)-(3-bromo-5-methyl-4-oxocyclohexa-2,5-dien-1-ylidene)methyl]benzenesulfonate
InChI Key	KVSJYIXUWNOWBD-UGAWPWHASA-M
Molecular Formula	C21H15Br2NaO5S

Thermo Scientific Chemicals Rose Bengal, 85%, pure, high purity, Biological stain

CAS: 632-69-9 Molecular Formula: C20H4Cl4I4Na2O5 Molecular Weight (g/mol): 1019.644 MDL Number: MFCD00005043 InChI Key: DPBQSRZQYAYDGY-UHFFFAOYSA-N Synonym: Acid Red 94,C.I. 45440 PubChem CID: 87244310 IUPAC Name: sodium;4,5,6,7-tetrachloro-3',6'-dihydroxy-2',4',5',7'-tetraiodospiro[2-benzofuran-3,9'-xanthene]-1-one SMILES: C1=C2C(=C(C(=C1I)O)I)OC3=C(C(=C(C=C3C24C5=C(C(=C(C(=C5Cl)Cl)Cl)Cl)C(=O)O4)I)O)I.[Na].[Na]

Pricing and Availability
Specifications

PubChem CID	87244310
CAS	632-69-9
Molecular Weight (g/mol)	1019.644
MDL Number	MFCD00005043
SMILES	C1=C2C(=C(C(=C1I)O)I)OC3=C(C(=C(C=C3C24C5=C(C(=C(C(=C5Cl)Cl)Cl)Cl)C(=O)O4)I)O)I.[Na].[Na]
Synonym	Acid Red 94,C.I. 45440
IUPAC Name	sodium;4,5,6,7-tetrachloro-3',6'-dihydroxy-2',4',5',7'-tetraiodospiro[2-benzofuran-3,9'-xanthene]-1-one
InChI Key	DPBQSRZQYAYDGY-UHFFFAOYSA-N
Molecular Formula	C20H4Cl4I4Na2O5

Thermo Scientific Chemicals Brilliant Blue G, pure

CAS: 6104-58-1 Molecular Formula: C47H48N3NaO7S2 Molecular Weight (g/mol): 854.025 MDL Number: MFCD00078482 InChI Key: RWVGQQGBQSJDQV-UHFFFAOYSA-M Synonym: Acid Blue 90,Brilliant Blue G 250,C.I. 42655 PubChem CID: 6328534 IUPAC Name: sodium;3-[[4-[(Z)-[4-(4-ethoxyanilino)phenyl]-[4-[ethyl-[(3-sulfonatophenyl)methyl]azaniumylidene]-2-methylcyclohexa-2,5-dien-1-ylidene]methyl]-N-ethyl-3-methylanilino]methyl]benzenesulfonate SMILES: CCN(CC1=CC(=CC=C1)S(=O)(=O)[O-])C2=CC(=C(C=C2)C(=C3C=CC(=[N+](CC)CC4=CC(=CC=C4)S(=O)(=O)[O-])C=C3C)C5=CC=C(C=C5)NC6=CC=C(C=C6)OCC)C.[Na+]

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Specifications

PubChem CID	6328534
CAS	6104-58-1
Molecular Weight (g/mol)	854.025
MDL Number	MFCD00078482
SMILES	CCN(CC1=CC(=CC=C1)S(=O)(=O)[O-])C2=CC(=C(C=C2)C(=C3C=CC(=[N+](CC)CC4=CC(=CC=C4)S(=O)(=O)[O-])C=C3C)C5=CC=C(C=C5)NC6=CC=C(C=C6)OCC)C.[Na+]
Synonym	Acid Blue 90,Brilliant Blue G 250,C.I. 42655
IUPAC Name	sodium;3-[[4-[(Z)-[4-(4-ethoxyanilino)phenyl]-[4-[ethyl-[(3-sulfonatophenyl)methyl]azaniumylidene]-2-methylcyclohexa-2,5-dien-1-ylidene]methyl]-N-ethyl-3-methylanilino]methyl]benzenesulfonate
InChI Key	RWVGQQGBQSJDQV-UHFFFAOYSA-M
Molecular Formula	C47H48N3NaO7S2

Thermo Scientific Chemicals Xylenol Orange, sodium salt, pure, water soluble

CAS: 3618-43-7 Molecular Formula: C₃₁H₂₈N₂Na₄O₁₃S

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Specifications

CAS	3618-43-7
Molecular Formula	C₃₁H₂₈N₂Na₄O₁₃S

Thermo Scientific Chemicals Eosin Y, pure, certified

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