Stains and Dyes

A variety of solutions used to selectively bind to and enhance the visibility of biological structures using color and/or fluorescence; used for histology, protein staining, electrophoresis, bacterial classification, blotting, etc.

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Thermo Scientific Chemicals Nile Red, 99%, pure

CAS: 7385-67-3 Molecular Formula: C20H18N2O2 Molecular Weight (g/mol): 318.38 MDL Number: MFCD00011639 InChI Key: VOFUROIFQGPCGE-UHFFFAOYSA-N Synonym: Nile blue A oxazone PubChem CID: 65182 ChEBI: CHEBI:52169 SMILES: CCN(CC)C1=CC=C2N=C3C(OC2=C1)=CC(=O)C1=CC=CC=C31

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Specifications

PubChem CID	65182
CAS	7385-67-3
Molecular Weight (g/mol)	318.38
ChEBI	CHEBI:52169
MDL Number	MFCD00011639
SMILES	CCN(CC)C1=CC=C2N=C3C(OC2=C1)=CC(=O)C1=CC=CC=C31
Synonym	Nile blue A oxazone
InChI Key	VOFUROIFQGPCGE-UHFFFAOYSA-N
Molecular Formula	C20H18N2O2

Thermo Scientific Chemicals Methylene Blue, 1% w/v aq. soln.

CAS: 122965-43-9 | C₁₆H₁₈ClN₃S

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Specifications

Concentration or Composition (by Analyte or Components)	3, 7-Bis(dimethylamino)phenothiazin-5-ium chloride hydrate: 1.0%; Water: 99%
CAS	7732-18-5
MDL Number	MFCD00012111
Physical Form	Liquid
Solubility Information	Miscible with ethanol,chloroform,glacial acetic acid and glycerol. Slightly miscible with pyridine. Immiscible with ethyl ether,xylene,oleic acid,ethanol and acetone.
Chemical Name or Material	Methylene Blue
TSCA	Yes
Recommended Storage	Ambient temperatures
Molecular Formula	C₁₆H₁₈ClN₃S
Formula Weight	319.86
Vapor Pressure	23 hPa (17mm Hg) at 20°C
Assay Percent Range	1% w/v aqueous solution

Thermo Scientific Chemicals Methyl Orange, 0.1% w/v aq. soln.

Pricing and Availability

Thermo Scientific Chemicals Rhodamine B, 98+%, pure

CAS: 81-88-9 Molecular Formula: C28H31ClN2O3 Molecular Weight (g/mol): 479.02 MDL Number: MFCD00011931 InChI Key: PYWVYCXTNDRMGF-UHFFFAOYSA-N Synonym: Basic Violet 10,C.I. 45170 PubChem CID: 6694 ChEBI: CHEBI:52334 IUPAC Name: [9-(2-carboxyphenyl)-6-(diethylamino)xanthen-3-ylidene]-diethylazanium;chloride SMILES: [Cl-].CCN(CC)C1=CC2=[O+]C3=CC(=CC=C3C(C3=CC=CC=C3C(O)=O)=C2C=C1)N(CC)CC

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Specifications

PubChem CID	6694
CAS	81-88-9
Molecular Weight (g/mol)	479.02
ChEBI	CHEBI:52334
MDL Number	MFCD00011931
SMILES	[Cl-].CCN(CC)C1=CC2=[O+]C3=CC(=CC=C3C(C3=CC=CC=C3C(O)=O)=C2C=C1)N(CC)CC
Synonym	Basic Violet 10,C.I. 45170
IUPAC Name	[9-(2-carboxyphenyl)-6-(diethylamino)xanthen-3-ylidene]-diethylazanium;chloride
InChI Key	PYWVYCXTNDRMGF-UHFFFAOYSA-N
Molecular Formula	C28H31ClN2O3

Thermo Scientific Chemicals Lissamine Green B, pure

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Methylene Blue trihydrate

CAS: 7220-79-3 Molecular Formula: C16H24ClN3O3S Molecular Weight (g/mol): 373.90 MDL Number: MFCD00150008 InChI Key: XQAXGZLFSSPBMK-UHFFFAOYSA-M Synonym: C.I. 52015; Basic Blue 9 PubChem CID: 104827 IUPAC Name: [7-(dimethylamino)phenothiazin-3-ylidene]-dimethylazanium;chloride;trihydrate SMILES: O.O.O.[Cl-].CN(C)C1=CC2=[S+]C3=CC(=CC=C3N=C2C=C1)N(C)C

Pricing and Availability
Specifications

PubChem CID	104827
CAS	7220-79-3
Molecular Weight (g/mol)	373.90
MDL Number	MFCD00150008
SMILES	O.O.O.[Cl-].CN(C)C1=CC2=[S+]C3=CC(=CC=C3N=C2C=C1)N(C)C
Synonym	C.I. 52015; Basic Blue 9
IUPAC Name	[7-(dimethylamino)phenothiazin-3-ylidene]-dimethylazanium;chloride;trihydrate
InChI Key	XQAXGZLFSSPBMK-UHFFFAOYSA-M
Molecular Formula	C16H24ClN3O3S

Thermo Scientific Chemicals Eriochrome Black T

CAS: 1787-61-7 Molecular Formula: C20H12N3NaO7S Molecular Weight (g/mol): 461.38 MDL Number: MFCD00003935 InChI Key: JHUJLRKQZAPSDP-GXTSIBQPSA-M Synonym: C.I. 14645; Mordant Black 11 PubChem CID: 87355429 SMILES: [Na+].OC1=C2C=CC=CC2=CC=C1N\N=C1/C(=O)C=C(C2=CC(=CC=C12)[N+]([O-])=O)S([O-])(=O)=O

Pricing and Availability
Specifications

PubChem CID	87355429
CAS	1787-61-7
Molecular Weight (g/mol)	461.38
MDL Number	MFCD00003935
SMILES	[Na+].OC1=C2C=CC=CC2=CC=C1N\N=C1/C(=O)C=C(C2=CC(=CC=C12)[N+]([O-])=O)S([O-])(=O)=O
Synonym	C.I. 14645; Mordant Black 11
InChI Key	JHUJLRKQZAPSDP-GXTSIBQPSA-M
Molecular Formula	C20H12N3NaO7S

Thermo Scientific Chemicals Rose Bengal, 85%, pure, certified

CAS: 632-69-9 Molecular Formula: C20H4Cl4I4Na2O5 Molecular Weight (g/mol): 1019.644 MDL Number: MFCD00005043 InChI Key: DPBQSRZQYAYDGY-UHFFFAOYSA-N Synonym: Acid Red 94,C.I. 45440 PubChem CID: 87244310 IUPAC Name: sodium;4,5,6,7-tetrachloro-3',6'-dihydroxy-2',4',5',7'-tetraiodospiro[2-benzofuran-3,9'-xanthene]-1-one SMILES: C1=C2C(=C(C(=C1I)O)I)OC3=C(C(=C(C=C3C24C5=C(C(=C(C(=C5Cl)Cl)Cl)Cl)C(=O)O4)I)O)I.[Na].[Na]

Pricing and Availability
Specifications

PubChem CID	87244310
CAS	632-69-9
Molecular Weight (g/mol)	1019.644
MDL Number	MFCD00005043
SMILES	C1=C2C(=C(C(=C1I)O)I)OC3=C(C(=C(C=C3C24C5=C(C(=C(C(=C5Cl)Cl)Cl)Cl)C(=O)O4)I)O)I.[Na].[Na]
Synonym	Acid Red 94,C.I. 45440
IUPAC Name	sodium;4,5,6,7-tetrachloro-3',6'-dihydroxy-2',4',5',7'-tetraiodospiro[2-benzofuran-3,9'-xanthene]-1-one
InChI Key	DPBQSRZQYAYDGY-UHFFFAOYSA-N
Molecular Formula	C20H4Cl4I4Na2O5

Thermo Scientific Chemicals Cresyl Violet acetate

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Thermo Scientific Chemicals Phenol Red, pure, indicator

CAS: 143-74-8 Molecular Formula: C19H14O5S Molecular Weight (g/mol): 354.38 MDL Number: MFCD00003552 InChI Key: BELBBZDIHDAJOR-UHFFFAOYSA-N Synonym: Phenolsulfonephthalein PubChem CID: 4766 ChEBI: CHEBI:31991 SMILES: OC1=CC=C(C=C1)C1(OS(=O)(=O)C2=CC=CC=C12)C1=CC=C(O)C=C1

Pricing and Availability
Specifications

PubChem CID	4766
CAS	143-74-8
Molecular Weight (g/mol)	354.38
ChEBI	CHEBI:31991
MDL Number	MFCD00003552
SMILES	OC1=CC=C(C=C1)C1(OS(=O)(=O)C2=CC=CC=C12)C1=CC=C(O)C=C1
Synonym	Phenolsulfonephthalein
InChI Key	BELBBZDIHDAJOR-UHFFFAOYSA-N
Molecular Formula	C19H14O5S

Xylene cyanol FF, ∼75%

CAS: 2650-17-1 Molecular Formula: C25H27N2NaO6S2 Molecular Weight (g/mol): 538.61 MDL Number: MFCD00019481 InChI Key: VVLFAAMTGMGYBS-KRQUPCAFSA-M Synonym: Acid blue 147 monosidium salt,C.I. 42135 IUPAC Name: sodium 4-{[4-(ethylamino)-3-methylphenyl][(1Z,4Z)-4-(ethylimino)-3-methylcyclohexa-2,5-dien-1-ylidene]methyl}-3-sulfobenzene-1-sulfonate SMILES: [Na+].CCNC1=C(C)C=C(C=C1)C(=C1/C=C\C(=N\CC)\C(C)=C1)\C1=C(C=C(C=C1)S([O-])(=O)=O)S(O)(=O)=O

Pricing and Availability
Specifications

CAS	2650-17-1
Molecular Weight (g/mol)	538.61
MDL Number	MFCD00019481
SMILES	[Na+].CCNC1=C(C)C=C(C=C1)C(=C1/C=C\C(=N\CC)\C(C)=C1)\C1=C(C=C(C=C1)S([O-])(=O)=O)S(O)(=O)=O
Synonym	Acid blue 147 monosidium salt,C.I. 42135
IUPAC Name	sodium 4-{[4-(ethylamino)-3-methylphenyl][(1Z,4Z)-4-(ethylimino)-3-methylcyclohexa-2,5-dien-1-ylidene]methyl}-3-sulfobenzene-1-sulfonate
InChI Key	VVLFAAMTGMGYBS-KRQUPCAFSA-M
Molecular Formula	C25H27N2NaO6S2

Thermo Scientific Chemicals Bromocresol Green

CAS: 76-60-8 Molecular Formula: C21H14Br4O5S Molecular Weight (g/mol): 698.014 MDL Number: MFCD00005874 InChI Key: FRPHFZCDPYBUAU-UHFFFAOYSA-N Synonym: Bromcresol Green PubChem CID: 6451 IUPAC Name: 2,6-dibromo-4-[3-(3,5-dibromo-4-hydroxy-2-methylphenyl)-1,1-dioxo-2,1$l^{6}-benzoxathiol-3-yl]-3-methylphenol SMILES: CC1=C(C(=C(C=C1C2(C3=CC=CC=C3S(=O)(=O)O2)C4=CC(=C(C(=C4C)Br)O)Br)Br)O)Br

Pricing and Availability
Specifications

PubChem CID	6451
CAS	76-60-8
Molecular Weight (g/mol)	698.014
MDL Number	MFCD00005874
SMILES	CC1=C(C(=C(C=C1C2(C3=CC=CC=C3S(=O)(=O)O2)C4=CC(=C(C(=C4C)Br)O)Br)Br)O)Br
Synonym	Bromcresol Green
IUPAC Name	2,6-dibromo-4-[3-(3,5-dibromo-4-hydroxy-2-methylphenyl)-1,1-dioxo-2,1$l^{6}-benzoxathiol-3-yl]-3-methylphenol
InChI Key	FRPHFZCDPYBUAU-UHFFFAOYSA-N
Molecular Formula	C21H14Br4O5S

Amido Black 10B

CAS: 1064-48-8 Molecular Formula: C22H14N6Na2O9S2 Molecular Weight (g/mol): 616.487 MDL Number: MFCD00004017 InChI Key: HKBVRFLHNUEVRO-UHFFFAOYSA-L Synonym: C.I. 20470,Naphthalene Black 10B PubChem CID: 44134531 IUPAC Name: disodium;4-amino-3-[(4-nitrophenyl)diazenyl]-5-oxo-6-(phenylhydrazinylidene)naphthalene-2,7-disulfonate SMILES: C1=CC=C(C=C1)NN=C2C(=CC3=CC(=C(C(=C3C2=O)N)N=NC4=CC=C(C=C4)[N+](=O)[O-])S(=O)(=O)[O-])S(=O)(=O)[O-].[Na+].[Na+]

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Specifications

PubChem CID	44134531
CAS	1064-48-8
Molecular Weight (g/mol)	616.487
MDL Number	MFCD00004017
SMILES	C1=CC=C(C=C1)NN=C2C(=CC3=CC(=C(C(=C3C2=O)N)N=NC4=CC=C(C=C4)[N+](=O)[O-])S(=O)(=O)[O-])S(=O)(=O)[O-].[Na+].[Na+]
Synonym	C.I. 20470,Naphthalene Black 10B
IUPAC Name	disodium;4-amino-3-[(4-nitrophenyl)diazenyl]-5-oxo-6-(phenylhydrazinylidene)naphthalene-2,7-disulfonate
InChI Key	HKBVRFLHNUEVRO-UHFFFAOYSA-L
Molecular Formula	C22H14N6Na2O9S2

Thermo Scientific Chemicals Methyl blue

CAS: 28983-56-4 Molecular Formula: C37H26N3Na2O9S3 Molecular Weight (g/mol): 798.79 MDL Number: MFCD00058509 InChI Key: TUHAIJABPUJAEY-UHFFFAOYSA-K Synonym: Acid blue 93; C.I. 42780 PubChem CID: 76956083 SMILES: [Na+].[Na+].[O-]S(=O)(=O)C1=CC=CC=C1NC1=CC=C(C=C1)C(C1=CC=C(NC2=CC=CC=C2S([O-])(=O)=O)C=C1)=C1C=CC(C=C1)=NC1=CC=CC=C1S([O-])(=O)=O

Pricing and Availability
Specifications

PubChem CID	76956083
CAS	28983-56-4
Molecular Weight (g/mol)	798.79
MDL Number	MFCD00058509
SMILES	[Na+].[Na+].[O-]S(=O)(=O)C1=CC=CC=C1NC1=CC=C(C=C1)C(C1=CC=C(NC2=CC=CC=C2S([O-])(=O)=O)C=C1)=C1C=CC(C=C1)=NC1=CC=CC=C1S([O-])(=O)=O
Synonym	Acid blue 93; C.I. 42780
InChI Key	TUHAIJABPUJAEY-UHFFFAOYSA-K
Molecular Formula	C37H26N3Na2O9S3

Bromothymol Blue sodium salt, 0.04% w/v aq. soln.

CAS: 34722-90-2 Molecular Formula: C27H27Br2NaO5S Molecular Weight (g/mol): 646.37 MDL Number: MFCD00077263,MFCD00077263,MFCD00077263 InChI Key: NMKFVGALBGZKGW-FKWCIMQXSA-M PubChem CID: 102183223 SMILES: [Na+].CC(C)C1=CC(\C(C2=CC=CC=C2S([O-])(=O)=O)=C2/C=C(C(C)C)C(=O)C(Br)=C2C)=C(C)C(Br)=C1O

Pricing and Availability
Specifications

PubChem CID	102183223
CAS	34722-90-2
Molecular Weight (g/mol)	646.37
MDL Number	MFCD00077263,MFCD00077263,MFCD00077263
SMILES	[Na+].CC(C)C1=CC(\C(C2=CC=CC=C2S([O-])(=O)=O)=C2/C=C(C(C)C)C(=O)C(Br)=C2C)=C(C)C(Br)=C1O
InChI Key	NMKFVGALBGZKGW-FKWCIMQXSA-M
Molecular Formula	C27H27Br2NaO5S

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