Stains and Dyes

A variety of solutions used to selectively bind to and enhance the visibility of biological structures using color and/or fluorescence; used for histology, protein staining, electrophoresis, bacterial classification, blotting, etc.

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Thermo Scientific Chemicals Methylene Blue, pure, certified, residual water

CAS: 7220-79-3 Molecular Formula: C16H24ClN3O3S Molecular Weight (g/mol): 373.90 MDL Number: MFCD00150008 InChI Key: XQAXGZLFSSPBMK-UHFFFAOYSA-M Synonym: Basic Blue 9 PubChem CID: 6099 ChEBI: CHEBI:6872 IUPAC Name: [7-(dimethylamino)phenothiazin-3-ylidene]-dimethylazanium;chloride SMILES: O.O.O.[Cl-].CN(C)C1=CC2=[S+]C3=CC(=CC=C3N=C2C=C1)N(C)C

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Specifications

PubChem CID	6099
CAS	7220-79-3
Molecular Weight (g/mol)	373.90
ChEBI	CHEBI:6872
MDL Number	MFCD00150008
SMILES	O.O.O.[Cl-].CN(C)C1=CC2=[S+]C3=CC(=CC=C3N=C2C=C1)N(C)C
Synonym	Basic Blue 9
IUPAC Name	[7-(dimethylamino)phenothiazin-3-ylidene]-dimethylazanium;chloride
InChI Key	XQAXGZLFSSPBMK-UHFFFAOYSA-M
Molecular Formula	C16H24ClN3O3S

Thermo Scientific Chemicals Bromophenol Blue

CAS: 115-39-9 Molecular Formula: C19H10Br4O5S Molecular Weight (g/mol): 669.96 MDL Number: MFCD00005875 InChI Key: UDSAIICHUKSCKT-UHFFFAOYSA-N Synonym: Bromphenol Blue PubChem CID: 8272 ChEBI: CHEBI:59424 IUPAC Name: 2,6-dibromo-4-[3-(3,5-dibromo-4-hydroxyphenyl)-1,1-dioxo-2,1$l^{6}-benzoxathiol-3-yl]phenol SMILES: C1=CC=C2C(=C1)C(OS2(=O)=O)(C3=CC(=C(C(=C3)Br)O)Br)C4=CC(=C(C(=C4)Br)O)Br

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Specifications

PubChem CID	8272
CAS	115-39-9
Molecular Weight (g/mol)	669.96
ChEBI	CHEBI:59424
MDL Number	MFCD00005875
SMILES	C1=CC=C2C(=C1)C(OS2(=O)=O)(C3=CC(=C(C(=C3)Br)O)Br)C4=CC(=C(C(=C4)Br)O)Br
Synonym	Bromphenol Blue
IUPAC Name	2,6-dibromo-4-[3-(3,5-dibromo-4-hydroxyphenyl)-1,1-dioxo-2,1$l^{6}-benzoxathiol-3-yl]phenol
InChI Key	UDSAIICHUKSCKT-UHFFFAOYSA-N
Molecular Formula	C19H10Br4O5S

Thermo Scientific Chemicals Eriochrome Black T

CAS: 1787-61-7 Molecular Formula: C20H12N3NaO7S Molecular Weight (g/mol): 461.38 MDL Number: MFCD00003935 InChI Key: JHUJLRKQZAPSDP-GXTSIBQPSA-M Synonym: C.I. 14645; Mordant Black 11 PubChem CID: 87355429 SMILES: [Na+].OC1=C2C=CC=CC2=CC=C1N\N=C1/C(=O)C=C(C2=CC(=CC=C12)[N+]([O-])=O)S([O-])(=O)=O

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Specifications

PubChem CID	87355429
CAS	1787-61-7
Molecular Weight (g/mol)	461.38
MDL Number	MFCD00003935
SMILES	[Na+].OC1=C2C=CC=CC2=CC=C1N\N=C1/C(=O)C=C(C2=CC(=CC=C12)[N+]([O-])=O)S([O-])(=O)=O
Synonym	C.I. 14645; Mordant Black 11
InChI Key	JHUJLRKQZAPSDP-GXTSIBQPSA-M
Molecular Formula	C20H12N3NaO7S

Thermo Scientific Chemicals Sudan III

CAS: 85-86-9 Molecular Formula: C22H16N4O Molecular Weight (g/mol): 352.397 MDL Number: MFCD00003905 InChI Key: HTPQPMPFXUWUOT-UHFFFAOYSA-N Synonym: C.I. 26100; Solvent Red 23 PubChem CID: 6789251 IUPAC Name: 1-[(4-phenyldiazenylphenyl)hydrazinylidene]naphthalen-2-one SMILES: C1=CC=C(C=C1)N=NC2=CC=C(C=C2)NN=C3C(=O)C=CC4=CC=CC=C43

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Specifications

PubChem CID	6789251
CAS	85-86-9
Molecular Weight (g/mol)	352.397
MDL Number	MFCD00003905
SMILES	C1=CC=C(C=C1)N=NC2=CC=C(C=C2)NN=C3C(=O)C=CC4=CC=CC=C43
Synonym	C.I. 26100; Solvent Red 23
IUPAC Name	1-[(4-phenyldiazenylphenyl)hydrazinylidene]naphthalen-2-one
InChI Key	HTPQPMPFXUWUOT-UHFFFAOYSA-N
Molecular Formula	C22H16N4O

Thermo Scientific Chemicals Bromocresol Green

CAS: 76-60-8 Molecular Formula: C21H14Br4O5S Molecular Weight (g/mol): 698.014 MDL Number: MFCD00005874 InChI Key: FRPHFZCDPYBUAU-UHFFFAOYSA-N Synonym: Bromcresol Green PubChem CID: 6451 IUPAC Name: 2,6-dibromo-4-[3-(3,5-dibromo-4-hydroxy-2-methylphenyl)-1,1-dioxo-2,1$l^{6}-benzoxathiol-3-yl]-3-methylphenol SMILES: CC1=C(C(=C(C=C1C2(C3=CC=CC=C3S(=O)(=O)O2)C4=CC(=C(C(=C4C)Br)O)Br)Br)O)Br

Pricing and Availability
Specifications

PubChem CID	6451
CAS	76-60-8
Molecular Weight (g/mol)	698.014
MDL Number	MFCD00005874
SMILES	CC1=C(C(=C(C=C1C2(C3=CC=CC=C3S(=O)(=O)O2)C4=CC(=C(C(=C4C)Br)O)Br)Br)O)Br
Synonym	Bromcresol Green
IUPAC Name	2,6-dibromo-4-[3-(3,5-dibromo-4-hydroxy-2-methylphenyl)-1,1-dioxo-2,1$l^{6}-benzoxathiol-3-yl]-3-methylphenol
InChI Key	FRPHFZCDPYBUAU-UHFFFAOYSA-N
Molecular Formula	C21H14Br4O5S

Thermo Scientific Chemicals Methyl blue

CAS: 28983-56-4 Molecular Formula: C37H26N3Na2O9S3 Molecular Weight (g/mol): 798.79 MDL Number: MFCD00058509 InChI Key: TUHAIJABPUJAEY-UHFFFAOYSA-K Synonym: Acid blue 93; C.I. 42780 PubChem CID: 76956083 SMILES: [Na+].[Na+].[O-]S(=O)(=O)C1=CC=CC=C1NC1=CC=C(C=C1)C(C1=CC=C(NC2=CC=CC=C2S([O-])(=O)=O)C=C1)=C1C=CC(C=C1)=NC1=CC=CC=C1S([O-])(=O)=O

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Specifications

PubChem CID	76956083
CAS	28983-56-4
Molecular Weight (g/mol)	798.79
MDL Number	MFCD00058509
SMILES	[Na+].[Na+].[O-]S(=O)(=O)C1=CC=CC=C1NC1=CC=C(C=C1)C(C1=CC=C(NC2=CC=CC=C2S([O-])(=O)=O)C=C1)=C1C=CC(C=C1)=NC1=CC=CC=C1S([O-])(=O)=O
Synonym	Acid blue 93; C.I. 42780
InChI Key	TUHAIJABPUJAEY-UHFFFAOYSA-K
Molecular Formula	C37H26N3Na2O9S3

Thermo Scientific Chemicals Methylene Blue hydrate, 96+%, high purity biological stain

CAS: 122965-43-9 Molecular Formula: C16H18ClN3S Molecular Weight (g/mol): 319.85 MDL Number: MFCD00150006 InChI Key: CXKWCBBOMKCUKX-UHFFFAOYSA-M Synonym: Basic Blue 9 hydrate,C.I. 52015 hydrate PubChem CID: 16211647 IUPAC Name: [7-(dimethylamino)phenothiazin-3-ylidene]-dimethylazanium;chloride;hydrate SMILES: [Cl-].CN(C)C1=CC=C2N=C3C=CC(C=C3SC2=C1)=[N+](C)C

Pricing and Availability
Specifications

PubChem CID	16211647
CAS	122965-43-9
Molecular Weight (g/mol)	319.85
MDL Number	MFCD00150006
SMILES	[Cl-].CN(C)C1=CC=C2N=C3C=CC(C=C3SC2=C1)=[N+](C)C
Synonym	Basic Blue 9 hydrate,C.I. 52015 hydrate
IUPAC Name	[7-(dimethylamino)phenothiazin-3-ylidene]-dimethylazanium;chloride;hydrate
InChI Key	CXKWCBBOMKCUKX-UHFFFAOYSA-M
Molecular Formula	C16H18ClN3S

Thermo Scientific Chemicals Rhodamine B

CAS: 81-88-9 Molecular Formula: C28H31ClN2O3 Molecular Weight (g/mol): 479.02 MDL Number: MFCD00011931 InChI Key: PYWVYCXTNDRMGF-UHFFFAOYSA-N PubChem CID: 6694 ChEBI: CHEBI:52334 IUPAC Name: [9-(2-carboxyphenyl)-6-(diethylamino)xanthen-3-ylidene]-diethylazanium;chloride SMILES: [Cl-].CCN(CC)C1=CC2=[O+]C3=CC(=CC=C3C(C3=CC=CC=C3C(O)=O)=C2C=C1)N(CC)CC

Pricing and Availability
Specifications

PubChem CID	6694
CAS	81-88-9
Molecular Weight (g/mol)	479.02
ChEBI	CHEBI:52334
MDL Number	MFCD00011931
SMILES	[Cl-].CCN(CC)C1=CC2=[O+]C3=CC(=CC=C3C(C3=CC=CC=C3C(O)=O)=C2C=C1)N(CC)CC
IUPAC Name	[9-(2-carboxyphenyl)-6-(diethylamino)xanthen-3-ylidene]-diethylazanium;chloride
InChI Key	PYWVYCXTNDRMGF-UHFFFAOYSA-N
Molecular Formula	C28H31ClN2O3

Thermo Scientific Chemicals Methylene Blue, high purity, biological stain

CAS: 122965-43-9 Molecular Formula: C16H18ClN3S Molecular Weight (g/mol): 319.85 MDL Number: MFCD00150006 InChI Key: CXKWCBBOMKCUKX-UHFFFAOYSA-M Synonym: Basic Blue 9; C.I. 52015 PubChem CID: 16211647 IUPAC Name: [7-(dimethylamino)phenothiazin-3-ylidene]-dimethylazanium;chloride;hydrate SMILES: [Cl-].CN(C)C1=CC=C2N=C3C=CC(C=C3SC2=C1)=[N+](C)C

Pricing and Availability
Specifications

PubChem CID	16211647
CAS	122965-43-9
Molecular Weight (g/mol)	319.85
MDL Number	MFCD00150006
SMILES	[Cl-].CN(C)C1=CC=C2N=C3C=CC(C=C3SC2=C1)=[N+](C)C
Synonym	Basic Blue 9; C.I. 52015
IUPAC Name	[7-(dimethylamino)phenothiazin-3-ylidene]-dimethylazanium;chloride;hydrate
InChI Key	CXKWCBBOMKCUKX-UHFFFAOYSA-M
Molecular Formula	C16H18ClN3S

Thermo Scientific Chemicals Litmus, pure, indicator grade

CAS: 1393-92-6 MDL Number: MFCD00131528

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Specifications

CAS	1393-92-6
MDL Number	MFCD00131528

Thermo Scientific Chemicals Cresyl Violet acetate

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Thermo Scientific Chemicals Xylenol Orange, sodium salt, pure, water soluble

CAS: 3618-43-7 Molecular Formula: C₃₁H₂₈N₂Na₄O₁₃S

Pricing and Availability
Specifications

CAS	3618-43-7
Molecular Formula	C₃₁H₂₈N₂Na₄O₁₃S

Thermo Scientific Chemicals Methylene Blue hydrate, pure

CAS: 122965-43-9 Molecular Formula: C16H18ClN3S Molecular Weight (g/mol): 319.85 MDL Number: MFCD00150006 InChI Key: CXKWCBBOMKCUKX-UHFFFAOYSA-M Synonym: Basic Blue 9 hydrate,C.I. 52015 hydrate PubChem CID: 16211647 SMILES: [Cl-].CN(C)C1=CC=C2N=C3C=CC(C=C3SC2=C1)=[N+](C)C

Pricing and Availability
Specifications

PubChem CID	16211647
CAS	122965-43-9
Molecular Weight (g/mol)	319.85
MDL Number	MFCD00150006
SMILES	[Cl-].CN(C)C1=CC=C2N=C3C=CC(C=C3SC2=C1)=[N+](C)C
Synonym	Basic Blue 9 hydrate,C.I. 52015 hydrate
InChI Key	CXKWCBBOMKCUKX-UHFFFAOYSA-M
Molecular Formula	C16H18ClN3S

Thermo Scientific Chemicals Safranin O, 85%, pure, certified

CAS: 477-73-6 Molecular Formula: C20H19ClN4 Molecular Weight (g/mol): 350.85 MDL Number: MFCD00011759 InChI Key: QRYAEWIQIBAZOJ-UHFFFAOYSA-N Synonym: Basic Red 2,C.I. 50240,3, 7-Diamino-2, 8-dimethyl-5-phenylphenazinium chloride PubChem CID: 2723800 IUPAC Name: 3,7-dimethyl-10-phenylphenazin-10-ium-2,8-diamine;chloride SMILES: [Cl-].CC1=C(N)C=C2C(=C1)N=C1C(C)=C(N)C=CC1=[N+]2C1=CC=CC=C1

Pricing and Availability
Specifications

PubChem CID	2723800
CAS	477-73-6
Molecular Weight (g/mol)	350.85
MDL Number	MFCD00011759
SMILES	[Cl-].CC1=C(N)C=C2C(=C1)N=C1C(C)=C(N)C=CC1=[N+]2C1=CC=CC=C1
Synonym	Basic Red 2,C.I. 50240,3, 7-Diamino-2, 8-dimethyl-5-phenylphenazinium chloride
IUPAC Name	3,7-dimethyl-10-phenylphenazin-10-ium-2,8-diamine;chloride
InChI Key	QRYAEWIQIBAZOJ-UHFFFAOYSA-N
Molecular Formula	C20H19ClN4

Thermo Scientific Chemicals Bromothymol Blue

CAS: 76-59-5 Molecular Formula: C27H28Br2O5S Molecular Weight (g/mol): 624.384 MDL Number: MFCD00005872 InChI Key: NUHCTOLBWMJMLX-UHFFFAOYSA-N Synonym: Bromthymol Blue PubChem CID: 6450 ChEBI: CHEBI:86155 IUPAC Name: 2-bromo-4-[3-(3-bromo-4-hydroxy-2-methyl-5-propan-2-ylphenyl)-1,1-dioxo-2,1$l^{6}-benzoxathiol-3-yl]-3-methyl-6-propan-2-ylphenol SMILES: CC1=C(C(=C(C=C1C2(C3=CC=CC=C3S(=O)(=O)O2)C4=CC(=C(C(=C4C)Br)O)C(C)C)C(C)C)O)Br

Pricing and Availability
Specifications

PubChem CID	6450
CAS	76-59-5
Molecular Weight (g/mol)	624.384
ChEBI	CHEBI:86155
MDL Number	MFCD00005872
SMILES	CC1=C(C(=C(C=C1C2(C3=CC=CC=C3S(=O)(=O)O2)C4=CC(=C(C(=C4C)Br)O)C(C)C)C(C)C)O)Br
Synonym	Bromthymol Blue
IUPAC Name	2-bromo-4-[3-(3-bromo-4-hydroxy-2-methyl-5-propan-2-ylphenyl)-1,1-dioxo-2,1$l^{6}-benzoxathiol-3-yl]-3-methyl-6-propan-2-ylphenol
InChI Key	NUHCTOLBWMJMLX-UHFFFAOYSA-N
Molecular Formula	C27H28Br2O5S

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